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The Salafists are not just suffering from arrested political development; they face an intellectual discrepancy. On one hand, they wish to be part of the new democratic order and a mainstream player. On the other, they subscribe to a radical agenda that dictates the imposition of their stern interpretation of Islamic law across the Arab and Muslim world.

Their envisioned order is not just a problem for secularists, Christians, Jews and other minorities but also for more moderate Islamists such as the Muslim Brotherhood. The Brotherhood lost its monopoly on Islamism close to four decades ago but back then it didn't matter because the Brotherhood was an opposition movement. Now that the group has won political power in Egypt, the Salafists represent a threat to its political interests.

Some of the more politically savvy Salafists, especially the political parties, are willing to work with the Muslim Brotherhood toward the common goals of furthering the democratic transition and containing radical and militant tendencies. Ultimately, however, they seek to exploit the Brotherhood's pragmatism in order to undermine the mainstream Islamist movement's support among religious voters. Additionally, the Salafists are also trying to make use of their role as mediators between the Brotherhood-led government and the jihadists active in the Sinai region to enhance their bargaining power and lessen the Brotherhood's.

Salafists -- whether they operate through legal means or through raw street power -- can be expected to create problems for Egypt's new government led by President Mohammed Morsi, especially when it comes to foreign policy matters. A prime example is the recent case of the film-related violence, during which Morsi had a difficult time balancing the need to placate the masses at home and maintain a working relationship with the United States, upon which Egypt relies for its economic well-being. While the anger over the film is a passing phenomenon, the underlying dynamic persists.

There is also no shortage of issues for right-wing Islamists to exploit. U.S. imperatives in the region will continue to place the Morsi government in a tight spot and provide reasons for the Salafists to oppose Cairo's policies. Even more volatile than the dealings between the Morsi administration and Washington will be Israeli-Egyptian relations.

So far, Morsi has managed to avoid dealing too directly with Israel. But the Egyptian president and the Brotherhood cannot avoid this for too long. They know that they will face situations where they could be caught between the need to maintain peaceful relations with Israel and deal with Salafists taking advantage of the widespread anti-Israeli sentiment among Egyptians. This is one of the reasons Morsi and his associates have been speaking of revising the peace treaty with Israel, which is an attempt to manage the inevitable backlash on the home front.

Egypt's difficulties are particularly pronounced given the country's status as the leader of the Arab world, but Salafists of various stripes are slowly emerging as political stakeholders across the region, especially in Libya, Tunisia, Yemen, Gaza, Lebanon, Jordan and Syria. Democratization by its very nature is a messy affair in any context, but in the case of the Arab spring, Salafist entities can be expected to complicate political transitions and undermine stability and security in the Middle East.

The major challenge to stability in the Arab world thus lies only partially in the transition to democracy from autocracy. Greater than that is the challenge mainstream Islamists face from a complex and divided Salafist movement.